tag:blogger.com,1999:blog-6950434560823290164.post7517347632238124386..comments2009-07-22T19:16:48.485-07:00Comments on phylr gsoc: Setting up BioSQL 1.0.1 on Postgresql 8.3, ubuntu 9.04djiaohttp://www.blogger.com/profile/06486651456900333839noreply@blogger.comBlogger2125tag:blogger.com,1999:blog-6950434560823290164.post-32403618796250635082009-07-22T19:16:48.485-07:002009-07-22T19:16:48.485-07:00No, I didn't find any other BioPerl debian pac...No, I didn't find any other BioPerl debian packages. I notice the 1.5.2 is a quite old version. But that is also what is used according to the BioSQL instructions. So maybe BioSQL instructions also needs to be updated.<br /> <br />For now, I'm simply use bioperl to load data, so I hope I'll be fine. I actually tried to install BioPerl 1.6 in the CPAN way. I was able to install BioPerl, but no luck with BioPerl-db. There were many testing errors, and it was out of the reach of my PERL skills :(djiaohttps://www.blogger.com/profile/06486651456900333839noreply@blogger.comtag:blogger.com,1999:blog-6950434560823290164.post-41741936668745737302009-07-22T17:00:03.167-07:002009-07-22T17:00:03.167-07:00Hi Dazhi - do you know whether there are other Bio...Hi Dazhi - do you know whether there are other BioPerl packages available through apt-get? The current stable release is 1.6.0. Version 1.5.2 is significantly older, and also isn't a stable release in the strict sense of the word.<br /><br />It probably won't matter much for you though, but keep in mind that if you encounter issues with BioPerl you may just need to upgrade.Anonymousnoreply@blogger.com